Get-ChildItem for Certificates --> Local Computer Physical Stores

I am unable to determine the physical store that a root certificate is located.  the LocalMachine\My\Root contains several physical stores including Registry, Third-Party, Group Policy, Enterprise and Smart Card.  I have two certificates with the same serial and thumbprint that appear in the Root store.  They are in different physical stores, and I want to delete the one in the Enterprise Store.  When I use the below command, the only difference between the 2 outputs is the Handle.  I don't mind using the Handle as the differentiating factor, but I don't know how to do that.

$x = Get-ChildItem -Path Cert:\Localmachine\* -recurse | where {$_.Thumbprint -eq "59741974EF379804E416D3F49AAE176D630820EF"}

Question:  How do I tell which certificate is in which Physical Store?